PF02410


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02410, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02410
Description Ribosomal silencing factor during starvation

Occurence in the database

PF02410 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1554 FBDBKF_10070 106678 107004 1 rsfS ribosome silencing factor Morganella morganii S1
1 group_1554 EHELCC_04870 298643 298969 1 rsfS ribosome silencing factor Morganella morganii S2
2 group_1554 NLDBIP_04870 298439 298765 1 rsfS ribosome silencing factor Morganella morganii S4
3 group_1554 LHKJJB_13760 36613 36939 -1 rsfS ribosome silencing factor Morganella morganii S3
4 group_1554 HKOGLL_12775 107459 107785 1 rsfS ribosome silencing factor Morganella morganii S5
5 group_1554 F4V73_RS00265 64632 64958 -1 rsfS ribosome silencing factor Morganella psychrotolerans
6 group_1554 PMI_RS02110 495814 496140 -1 rsfS ribosome silencing factor Proteus mirabilis HI4320