PF02401


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02401, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02401
Description LytB protein

Occurence in the database

PF02401 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1127 FBDBKF_06435 125453 126403 -1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Morganella morganii S1
1 group_1127 EHELCC_09480 126025 126975 -1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Morganella morganii S2
2 group_1127 NLDBIP_09860 126025 126975 -1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Morganella morganii S4
3 group_1127 LHKJJB_07895 90263 91213 1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Morganella morganii S3
4 group_1127 HKOGLL_07445 90263 91213 1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Morganella morganii S5
5 group_1127 F4V73_RS15490 87398 88348 1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Morganella psychrotolerans
6 group_1127 PMI_RS00090 29683 30636 1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Proteus mirabilis HI4320