PF02348


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02348, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02348
Description Cytidylyltransferase

Occurence in the database

PF02348 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1236 FBDBKF_07195 112567 113316 1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase Morganella morganii S1
1 group_1236 EHELCC_03775 72870 73619 -1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase Morganella morganii S2
2 group_1236 NLDBIP_03775 72666 73415 -1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase Morganella morganii S4
3 group_1236 LHKJJB_09605 72780 73529 -1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase Morganella morganii S3
4 group_1236 HKOGLL_09370 117523 118272 1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase Morganella morganii S5
5 group_1236 F4V73_RS01380 300856 301605 1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase Morganella psychrotolerans
6 group_1236 PMI_RS03550 792624 793385 1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase Proteus mirabilis HI4320