PF02313


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02313, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02313
Description Fumarate reductase subunit D

Occurence in the database

PF02313 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_781 FBDBKF_03615 128651 129007 1 frdD fumarate reductase subunit FrdD Morganella morganii S1
1 group_781 EHELCC_06920 118096 118452 -1 frdD fumarate reductase subunit FrdD Morganella morganii S2
2 group_781 NLDBIP_07245 117969 118325 -1 frdD fumarate reductase subunit FrdD Morganella morganii S4
3 group_781 LHKJJB_06780 81715 82071 -1 frdD fumarate reductase subunit FrdD Morganella morganii S3
4 group_781 HKOGLL_04150 151316 151672 1 frdD fumarate reductase subunit FrdD Morganella morganii S5
5 group_781 F4V73_RS11255 391782 392138 -1 frdD fumarate reductase subunit FrdD Morganella psychrotolerans
6 group_781 PMI_RS17835 3917000 3917359 -1 frdD fumarate reductase subunit FrdD Proteus mirabilis HI4320