PF02153


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02153, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02153
Description Prephenate dehydrogenase, nucleotide-binding domain

Occurence in the database

PF02153 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2045 FBDBKF_15330 73854 74975 1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S1
1 group_2045 EHELCC_10915 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S2
2 group_2045 NLDBIP_11260 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S4
3 group_2045 LHKJJB_11120 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S3
4 group_2045 HKOGLL_09730 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S5
5 group_2045 F4V73_RS12120 9144 10265 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella psychrotolerans
6 group_2045 PMI_RS01885 441609 442733 1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Proteus mirabilis HI4320