PF02113


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02113, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02113
Description D-Ala-D-Ala carboxypeptidase 3 (S13) family

Occurence in the database

PF02113 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1394 FBDBKF_08610 103520 104962 -1 dacB serine-type D-Ala-D-Ala carboxypeptidase Morganella morganii S1
1 group_1394 EHELCC_12915 58763 60205 1 dacB serine-type D-Ala-D-Ala carboxypeptidase Morganella morganii S2
2 group_1394 NLDBIP_13255 58763 60205 1 dacB serine-type D-Ala-D-Ala carboxypeptidase Morganella morganii S4
3 group_1394 LHKJJB_13300 102238 103680 -1 dacB serine-type D-Ala-D-Ala carboxypeptidase Morganella morganii S3
4 group_1394 HKOGLL_11730 58763 60205 1 dacB serine-type D-Ala-D-Ala carboxypeptidase Morganella morganii S5
5 group_1394 F4V73_RS09835 70633 72075 -1 dacB serine-type D-Ala-D-Ala carboxypeptidase Morganella psychrotolerans
6 group_1394 PMI_RS16965 3733926 3735368 -1 dacB serine-type D-Ala-D-Ala carboxypeptidase Proteus mirabilis HI4320