PF01985


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01985, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01985
Description CRS1 / YhbY (CRM) domain

Occurence in the database

PF01985 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1396 FBDBKF_08620 105937 106230 -1 yhbY ribosome assembly RNA-binding protein YhbY Morganella morganii S1
1 group_1396 EHELCC_12905 57495 57788 1 yhbY ribosome assembly RNA-binding protein YhbY Morganella morganii S2
2 group_1396 NLDBIP_13245 57495 57788 1 yhbY ribosome assembly RNA-binding protein YhbY Morganella morganii S4
3 group_1396 LHKJJB_13310 104655 104948 -1 yhbY ribosome assembly RNA-binding protein YhbY Morganella morganii S3
4 group_1396 HKOGLL_11720 57495 57788 1 yhbY ribosome assembly RNA-binding protein YhbY Morganella morganii S5
5 group_1396 F4V73_RS09845 73044 73337 -1 yhbY ribosome assembly RNA-binding protein YhbY Morganella psychrotolerans
6 group_1396 PMI_RS16975 3736381 3736674 -1 yhbY ribosome assembly RNA-binding protein YhbY Proteus mirabilis HI4320