PF01963


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01963, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01963
Description TraB/PrgY/gumN family

Occurence in the database

PF01963 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1785 FBDBKF_13020 110265 111074 1 traB Uncharacterized conserved protein YbaP, TraB family Morganella morganii S1
1 group_1785 EHELCC_06335 280297 281106 1 traB Uncharacterized conserved protein YbaP, TraB family Morganella morganii S2
2 group_1785 NLDBIP_06655 321362 322171 1 traB Uncharacterized conserved protein YbaP, TraB family Morganella morganii S4
3 group_1785 LHKJJB_03535 298886 299695 1 traB Uncharacterized conserved protein YbaP, TraB family Morganella morganii S3
4 group_1785 HKOGLL_07010 220750 221559 1 traB Uncharacterized conserved protein YbaP, TraB family Morganella morganii S5
5 group_1785 F4V73_RS16205 50748 51557 1 TraB/GumN family protein Morganella psychrotolerans
6 group_1785 PMI_RS10720 2358390 2359199 1 TraB/GumN family protein Proteus mirabilis HI4320