PF01891


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01891, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01891
Description Cobalt uptake substrate-specific transmembrane region

Occurence in the database

PF01891 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2853 FBDBKF_10835 134921 135553 -1 cbiM cobalt transporter CbiM Morganella morganii S1
1 group_3081 FBDBKF_18855 16390 17124 -1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S1
2 group_3081 EHELCC_17050 16391 17125 -1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S2
3 group_2853 EHELCC_19420 5707 6339 -1 cbiM cobalt transporter CbiM Morganella morganii S2
4 group_2853 NLDBIP_15000 134911 135543 -1 cbiM cobalt transporter CbiM Morganella morganii S4
5 group_3081 NLDBIP_18430 16390 17124 -1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S4
6 group_3081 LHKJJB_09195 175205 175939 1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S3
7 group_2853 LHKJJB_14345 6183 6815 1 cbiM cobalt transporter CbiM Morganella morganii S3
8 group_3081 HKOGLL_08745 175205 175939 1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S5
9 group_2853 HKOGLL_12965 6183 6815 1 cbiM cobalt transporter CbiM Morganella morganii S5
10 group_3081 F4V73_RS13740 382753 383487 1 energy-coupling factor ABC transporter permease Morganella psychrotolerans
11 group_2853 F4V73_RS16915 6052 6684 1 cbiM cobalt transporter CbiM Morganella psychrotolerans