PF01741


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01741, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01741
Description Large-conductance mechanosensitive channel, MscL

Occurence in the database

PF01741 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2370 FBDBKF_19100 8520 8927 1 mscL large-conductance mechanosensitive channel protein MscL Morganella morganii S1
1 group_2370 EHELCC_18845 8520 8927 1 mscL large-conductance mechanosensitive channel protein MscL Morganella morganii S2
2 group_2370 NLDBIP_18860 8520 8927 1 mscL large-conductance mechanosensitive channel protein MscL Morganella morganii S4
3 group_2370 LHKJJB_18715 8520 8927 1 mscL large-conductance mechanosensitive channel protein MscL Morganella morganii S3
4 group_2370 HKOGLL_18450 8520 8927 1 mscL large-conductance mechanosensitive channel protein MscL Morganella morganii S5
5 group_2370 F4V73_RS19065 21470 21877 -1 mscL large-conductance mechanosensitive channel protein MscL Morganella psychrotolerans
6 group_2370 PMI_RS16290 3597009 3597416 -1 mscL large-conductance mechanosensitive channel protein MscL Proteus mirabilis HI4320