PF01678


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01678, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01678
Description Diaminopimelate epimerase

Occurence in the database

PF01678 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1347 FBDBKF_08345 44247 45071 1 dapF diaminopimelate epimerase Morganella morganii S1
1 group_1347 EHELCC_13180 118654 119478 -1 dapF diaminopimelate epimerase Morganella morganii S2
2 group_1347 NLDBIP_13520 118654 119478 -1 dapF diaminopimelate epimerase Morganella morganii S4
3 group_1347 LHKJJB_13035 42965 43789 1 dapF diaminopimelate epimerase Morganella morganii S3
4 group_1347 HKOGLL_11995 118654 119478 -1 dapF diaminopimelate epimerase Morganella morganii S5
5 group_1347 F4V73_RS09545 8953 9777 1 dapF diaminopimelate epimerase Morganella psychrotolerans
6 group_1347 PMI_RS16595 3658454 3659278 1 dapF diaminopimelate epimerase Proteus mirabilis HI4320