PF01649


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01649, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01649
Description Ribosomal protein S20

Occurence in the database

PF01649 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1132 FBDBKF_06460 131670 131930 1 rpsT 30S ribosomal protein S20 Morganella morganii S1
1 group_1132 EHELCC_09505 132242 132502 1 rpsT 30S ribosomal protein S20 Morganella morganii S2
2 group_1132 NLDBIP_09885 132242 132502 1 rpsT 30S ribosomal protein S20 Morganella morganii S4
3 group_1132 LHKJJB_07870 84736 84996 -1 rpsT 30S ribosomal protein S20 Morganella morganii S3
4 group_1132 HKOGLL_07420 84736 84996 -1 rpsT 30S ribosomal protein S20 Morganella morganii S5
5 group_1132 F4V73_RS15465 81650 81910 -1 rpsT 30S ribosomal protein S20 Morganella psychrotolerans
6 group_1132 PMI_RS00065 24170 24430 -1 rpsT 30S ribosomal protein S20 Proteus mirabilis HI4320