PF01645


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01645, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01645
Description Conserved region in glutamate synthase

Occurence in the database

PF01645 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_714 FBDBKF_03100 20336 23341 1 Glutamate synthase subunit alpha Morganella morganii S1
1 group_3223 FBDBKF_03105 23369 24793 1 Glutamate synthase [NADPH] large chain Morganella morganii S1
2 group_3223 EHELCC_07430 222310 223734 -1 Glutamate synthase [NADPH] large chain Morganella morganii S2
3 group_714 EHELCC_07435 223762 226767 -1 Glutamate synthase subunit alpha Morganella morganii S2
4 group_3223 NLDBIP_07755 222183 223607 -1 Glutamate synthase [NADPH] large chain Morganella morganii S4
5 group_714 NLDBIP_07760 223635 226640 -1 Glutamate synthase subunit alpha Morganella morganii S4
6 group_3223 LHKJJB_07290 185929 187353 -1 Glutamate synthase [NADPH] large chain Morganella morganii S3
7 group_714 LHKJJB_07295 187381 190386 -1 Glutamate synthase subunit alpha Morganella morganii S3
8 group_714 HKOGLL_03635 43001 46006 1 Glutamate synthase subunit alpha Morganella morganii S5
9 group_3223 HKOGLL_03640 46034 47458 1 Glutamate synthase [NADPH] large chain Morganella morganii S5
10 group_714 F4V73_RS11820 514315 518787 -1 gltB glutamate synthase large subunit Morganella psychrotolerans
11 group_714 PMI_RS18295 4013447 4017904 -1 gltB glutamate synthase large subunit Proteus mirabilis HI4320