PF01632


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01632, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01632
Description Ribosomal protein L35

Occurence in the database

PF01632 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1809 FBDBKF_13420 61637 61834 -1 rpmI 50S ribosomal protein L35 Morganella morganii S1
1 group_1809 EHELCC_08675 213357 213554 1 rpmI 50S ribosomal protein L35 Morganella morganii S2
2 group_1809 NLDBIP_09000 213357 213554 1 rpmI 50S ribosomal protein L35 Morganella morganii S4
3 group_1809 LHKJJB_05265 43605 43802 -1 rpmI 50S ribosomal protein L35 Morganella morganii S3
4 group_1809 HKOGLL_05650 197948 198145 1 rpmI 50S ribosomal protein L35 Morganella morganii S5
5 group_1809 F4V73_RS03345 713979 714176 1 rpmI 50S ribosomal protein L35 Morganella psychrotolerans
6 group_1809 PMI_RS05035 1100842 1101039 1 rpmI 50S ribosomal protein L35 Proteus mirabilis HI4320