PF01554


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01554, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01554
Description MatE

Occurence in the database

PF01554 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1026 FBDBKF_05775 158308 159681 1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S1
1 group_1291 FBDBKF_07860 100130 101476 -1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S1
2 group_1026 EHELCC_11815 21813 23249 -1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S2
3 group_1291 EHELCC_13690 74324 75670 -1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S2
4 group_1026 NLDBIP_12155 21768 23141 -1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S4
5 group_1291 NLDBIP_14135 95199 96545 -1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S4
6 group_1291 LHKJJB_08715 63204 64550 1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S3
7 group_1026 LHKJJB_12015 21813 23186 -1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S3
8 group_1291 HKOGLL_08265 63204 64550 1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S5
9 group_1026 HKOGLL_10630 21813 23186 -1 norM Na+-driven multidrug efflux pump, DinF/NorM/MATE family Morganella morganii S5
10 group_1026 F4V73_RS03550 757871 759244 -1 MATE family efflux transporter Morganella psychrotolerans
11 group_1291 F4V73_RS13160 249071 250417 1 MATE family efflux transporter Morganella psychrotolerans
12 group_1291 PMI_RS00720 185314 186654 -1 MATE family efflux transporter Proteus mirabilis HI4320
13 group_1026 PMI_RS06780 1480253 1481626 1 MATE family efflux transporter Proteus mirabilis HI4320