PF01416


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01416, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01416
Description tRNA pseudouridine synthase

Occurence in the database

PF01416 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1916 FBDBKF_14265 52411 53232 -1 truA tRNA pseudouridine(38-40) synthase TruA Morganella morganii S1
1 group_1916 EHELCC_08015 63753 64574 1 truA tRNA pseudouridine(38-40) synthase TruA Morganella morganii S2
2 group_1916 NLDBIP_08340 63753 64574 1 truA tRNA pseudouridine(38-40) synthase TruA Morganella morganii S4
3 group_1916 LHKJJB_05925 192585 193406 -1 truA tRNA pseudouridine(38-40) synthase TruA Morganella morganii S3
4 group_1916 HKOGLL_04990 48344 49165 1 truA tRNA pseudouridine(38-40) synthase TruA Morganella morganii S5
5 group_1916 F4V73_RS02645 557268 558089 1 truA tRNA pseudouridine(38-40) synthase TruA Morganella psychrotolerans
6 group_1916 PMI_RS08775 1918971 1919840 -1 truA tRNA pseudouridine(38-40) synthase TruA Proteus mirabilis HI4320