PF01351


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01351, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01351
Description Ribonuclease HII

Occurence in the database

PF01351 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1049 FBDBKF_05940 13803 14399 -1 rnhB ribonuclease HII Morganella morganii S1
1 group_1049 EHELCC_08985 14375 14971 -1 rnhB ribonuclease HII Morganella morganii S2
2 group_1049 NLDBIP_09365 14375 14971 -1 rnhB ribonuclease HII Morganella morganii S4
3 group_1049 LHKJJB_08390 202267 202863 1 rnhB ribonuclease HII Morganella morganii S3
4 group_1049 HKOGLL_07940 202267 202863 1 rnhB ribonuclease HII Morganella morganii S5
5 group_1049 F4V73_RS15955 199055 199651 1 rnhB ribonuclease HII Morganella psychrotolerans
6 group_1049 PMI_RS11215 2469311 2469901 -1 rnhB ribonuclease HII Proteus mirabilis HI4320