PF01343


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01343, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01343
Description Peptidase family S49

Occurence in the database

PF01343 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_942 FBDBKF_05125 32339 33391 -1 sohB protease SohB Morganella morganii S1
1 group_979 FBDBKF_05410 90944 92806 1 sppA signal peptide peptidase SppA Morganella morganii S1
2 group_979 EHELCC_12180 88688 90550 -1 sppA signal peptide peptidase SppA Morganella morganii S2
3 group_942 EHELCC_12465 148103 149155 1 sohB protease SohB Morganella morganii S2
4 group_979 NLDBIP_12520 88643 90505 -1 sppA signal peptide peptidase SppA Morganella morganii S4
5 group_942 NLDBIP_12805 148058 149110 1 sohB protease SohB Morganella morganii S4
6 group_979 LHKJJB_12380 88688 90550 -1 sppA signal peptide peptidase SppA Morganella morganii S3
7 group_942 LHKJJB_12665 148103 149155 1 sohB protease SohB Morganella morganii S3
8 group_979 HKOGLL_10995 88688 90550 -1 sppA signal peptide peptidase SppA Morganella morganii S5
9 group_942 HKOGLL_11280 148103 149155 1 sohB protease SohB Morganella morganii S5
10 group_979 F4V73_RS03885 822041 823903 -1 sppA signal peptide peptidase SppA Morganella psychrotolerans
11 group_942 F4V73_RS05580 1187383 1188435 -1 sohB protease SohB Morganella psychrotolerans
12 group_942 PMI_RS06445 1414635 1415681 -1 sohB protease SohB Proteus mirabilis HI4320
13 group_979 PMI_RS07265 1590922 1592778 1 sppA signal peptide peptidase SppA Proteus mirabilis HI4320