PF01316


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01316, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01316
Description Arginine repressor, DNA binding domain

Occurence in the database

PF01316 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1388 FBDBKF_08570 97100 97570 -1 argR transcriptional regulator ArgR Morganella morganii S1
1 group_1388 EHELCC_12955 66155 66625 1 argR transcriptional regulator ArgR Morganella morganii S2
2 group_1388 NLDBIP_13295 66155 66625 1 argR transcriptional regulator ArgR Morganella morganii S4
3 group_1388 LHKJJB_13260 95818 96288 -1 argR transcriptional regulator ArgR Morganella morganii S3
4 group_1388 HKOGLL_11770 66155 66625 1 argR transcriptional regulator ArgR Morganella morganii S5
5 group_1388 F4V73_RS09795 63681 64151 -1 argR transcriptional regulator ArgR Morganella psychrotolerans
6 group_1388 PMI_RS16920 3727394 3727864 -1 argR transcriptional regulator ArgR Proteus mirabilis HI4320