PF01250


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01250, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01250
Description Ribosomal protein S6

Occurence in the database

PF01250 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1373 FBDBKF_08495 81138 81527 1 rpsF 30S ribosomal protein S6 Morganella morganii S1
1 group_1373 EHELCC_13030 82198 82587 -1 rpsF 30S ribosomal protein S6 Morganella morganii S2
2 group_1373 NLDBIP_13370 82198 82587 -1 rpsF 30S ribosomal protein S6 Morganella morganii S4
3 group_1373 LHKJJB_13185 79856 80245 1 rpsF 30S ribosomal protein S6 Morganella morganii S3
4 group_1373 HKOGLL_11845 82198 82587 -1 rpsF 30S ribosomal protein S6 Morganella morganii S5
5 group_1373 F4V73_RS09715 47328 47717 1 rpsF 30S ribosomal protein S6 Morganella psychrotolerans
6 group_1373 PMI_RS16790 3702797 3703192 1 rpsF 30S ribosomal protein S6 Proteus mirabilis HI4320