Orthogroup:group_1429


Homologs in group_1429

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08830 FBDBKF_08830 Morganella morganii S1 valS valine--tRNA ligase
EHELCC_12695 EHELCC_12695 Morganella morganii S2 valS valine--tRNA ligase
NLDBIP_13035 NLDBIP_13035 Morganella morganii S4 valS valine--tRNA ligase
LHKJJB_13520 LHKJJB_13520 Morganella morganii S3 valS valine--tRNA ligase
HKOGLL_11510 HKOGLL_11510 Morganella morganii S5 valS valine--tRNA ligase
F4V73_RS10050 F4V73_RS10050 Morganella psychrotolerans - valine--tRNA ligase
PMI_RS17255 PMI_RS17255 Proteus mirabilis HI4320 - valine--tRNA ligase

Distribution of group_1429 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1429 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1429

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1429.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 valS 5
2 - 2

Product

# Product Occurence
1 valine--tRNA ligase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0525 7 J Translation, ribosomal structure and biogenesis (J) Valyl-tRNA synthetase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01873 7 valyl-tRNA synthetase [EC:6.1.1.9] Aminoacyl-tRNA biosynthesis -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00133 7 tRNA synthetases class I (I, L, M and V)
PF08264 7 Anticodon-binding domain of tRNA ligase
PF10458 7 Valyl tRNA synthetase tRNA binding arm

Annotations of the 533 SwissProt hits

Annotation Number of occurrences
Isoleucine--tRNA ligase 178
Isoleucine--tRNA ligase 1 6
Isoleucine--tRNA ligase 2 7
Probable valine--tRNA ligase, cytoplasmic 3
Probable valine--tRNA ligase, mitochondrial 1
Valine--tRNA ligase 326
Valine--tRNA ligase (Fragment) 2
Valine--tRNA ligase, chloroplastic/mitochondrial 2 1
Valine--tRNA ligase, mitochondrial 8
Valine--tRNA ligase, mitochondrial 1 1

Protein length

Min length 951
Max length 965
Mean length (sd) 962.6 (5.2)
Median length 965.0

Protein length distribution