PF01225


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01225, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01225
Description Mur ligase family, catalytic domain

Occurence in the database

PF01225 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_856 FBDBKF_04330 54058 55479 -1 murC UDP-N-acetylmuramate--L-alanine ligase Morganella morganii S1
1 group_861 FBDBKF_04355 60205 61578 -1 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase Morganella morganii S1
2 group_862 FBDBKF_04360 61575 63062 -1 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase Morganella morganii S1
3 group_1387 FBDBKF_08565 95680 97032 1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase Morganella morganii S1
4 group_856 EHELCC_05620 113515 114936 -1 murC UDP-N-acetylmuramate--L-alanine ligase Morganella morganii S2
5 group_861 EHELCC_05645 119662 121035 -1 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase Morganella morganii S2
6 group_862 EHELCC_05650 121032 122519 -1 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase Morganella morganii S2
7 group_1387 EHELCC_12960 66693 68045 -1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase Morganella morganii S2
8 group_856 NLDBIP_05940 154580 156001 -1 murC UDP-N-acetylmuramate--L-alanine ligase Morganella morganii S4
9 group_861 NLDBIP_05965 160727 162100 -1 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase Morganella morganii S4
10 group_862 NLDBIP_05970 162097 163584 -1 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase Morganella morganii S4
11 group_1387 NLDBIP_13300 66693 68045 -1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase Morganella morganii S4
12 group_856 LHKJJB_02820 132104 133525 -1 murC UDP-N-acetylmuramate--L-alanine ligase Morganella morganii S3
13 group_861 LHKJJB_02845 138251 139624 -1 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase Morganella morganii S3
14 group_862 LHKJJB_02850 139621 141108 -1 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase Morganella morganii S3
15 group_1387 LHKJJB_13255 94398 95750 1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase Morganella morganii S3
16 group_856 HKOGLL_06295 53968 55389 -1 murC UDP-N-acetylmuramate--L-alanine ligase Morganella morganii S5
17 group_861 HKOGLL_06320 60115 61488 -1 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase Morganella morganii S5
18 group_862 HKOGLL_06325 61485 62972 -1 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase Morganella morganii S5
19 group_1387 HKOGLL_11775 66693 68045 -1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase Morganella morganii S5
20 group_856 F4V73_RS08775 1815178 1816644 -1 murC UDP-N-acetylmuramate--L-alanine ligase Morganella psychrotolerans
21 group_861 F4V73_RS08800 1821325 1822698 -1 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase Morganella psychrotolerans
22 group_862 F4V73_RS08805 1822695 1824182 -1 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase Morganella psychrotolerans
23 group_1387 F4V73_RS09790 62130 63482 1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase Morganella psychrotolerans
24 group_856 PMI_RS10195 2231761 2233224 -1 murC UDP-N-acetylmuramate--L-alanine ligase Proteus mirabilis HI4320
25 group_861 PMI_RS10220 2237926 2239308 -1 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase Proteus mirabilis HI4320
26 group_862 PMI_RS10225 2239305 2240792 -1 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase Proteus mirabilis HI4320
27 group_1387 PMI_RS16915 3725946 3727325 1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase Proteus mirabilis HI4320