PF01196


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01196, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01196
Description Ribosomal protein L17

Occurence in the database

PF01196 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2373 FBDBKF_19115 9752 10138 -1 rplQ 50S ribosomal protein L17 Morganella morganii S1
1 group_2373 EHELCC_18860 9752 10138 -1 rplQ 50S ribosomal protein L17 Morganella morganii S2
2 group_2373 NLDBIP_18875 9752 10138 -1 rplQ 50S ribosomal protein L17 Morganella morganii S4
3 group_2373 LHKJJB_18730 9752 10138 -1 rplQ 50S ribosomal protein L17 Morganella morganii S3
4 group_2373 HKOGLL_18465 9752 10138 -1 rplQ 50S ribosomal protein L17 Morganella morganii S5
5 group_2373 F4V73_RS19050 20198 20584 1 rplQ 50S ribosomal protein L17 Morganella psychrotolerans
6 group_2373 PMI_RS16275 3595679 3596065 1 rplQ 50S ribosomal protein L17 Proteus mirabilis HI4320