PF01192


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01192, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01192
Description RNA polymerase Rpb6

Occurence in the database

PF01192 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1726 FBDBKF_12045 59614 59889 1 rpoZ DNA-directed RNA polymerase subunit omega Morganella morganii S1
1 group_1726 EHELCC_14260 74816 75091 -1 rpoZ DNA-directed RNA polymerase subunit omega Morganella morganii S2
2 group_1726 NLDBIP_15355 78753 79028 -1 rpoZ DNA-directed RNA polymerase subunit omega Morganella morganii S4
3 group_1726 LHKJJB_15255 59614 59889 1 rpoZ DNA-directed RNA polymerase subunit omega Morganella morganii S3
4 group_1726 HKOGLL_14375 46277 46552 1 rpoZ DNA-directed RNA polymerase subunit omega Morganella morganii S5
5 group_1726 F4V73_RS14600 154489 154764 -1 rpoZ DNA-directed RNA polymerase subunit omega Morganella psychrotolerans
6 group_1726 PMI_RS14150 3140640 3140915 1 rpoZ DNA-directed RNA polymerase subunit omega Proteus mirabilis HI4320