PF01142


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01142, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01142
Description tRNA pseudouridine synthase D (TruD)

Occurence in the database

PF01142 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2352 FBDBKF_18990 15408 16454 -1 truD tRNA pseudouridine(13) synthase TruD Morganella morganii S1
1 group_2352 EHELCC_18735 15408 16454 -1 truD tRNA pseudouridine(13) synthase TruD Morganella morganii S2
2 group_2352 NLDBIP_18570 9059 10105 1 truD tRNA pseudouridine(13) synthase TruD Morganella morganii S4
3 group_2352 LHKJJB_18605 15408 16454 -1 truD tRNA pseudouridine(13) synthase TruD Morganella morganii S3
4 group_2352 HKOGLL_18340 15408 16454 -1 truD tRNA pseudouridine(13) synthase TruD Morganella morganii S5
5 group_2352 F4V73_RS13900 416977 418023 -1 truD tRNA pseudouridine(13) synthase TruD Morganella psychrotolerans
6 group_2352 PMI_RS11035 2429709 2430761 -1 truD tRNA pseudouridine(13) synthase TruD Proteus mirabilis HI4320