PF01139


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01139, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01139
Description tRNA-splicing ligase RtcB

Occurence in the database

PF01139 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3281 FBDBKF_08865 154292 155518 1 rtcB RNA-splicing ligase RtcB, repairs tRNA damage Morganella morganii S1
1 group_2981 FBDBKF_16965 20698 21834 1 rtcB RNA ligase RtcB family protein Morganella morganii S1
2 group_3281 EHELCC_12660 8207 9433 -1 rtcB RNA-splicing ligase RtcB, repairs tRNA damage Morganella morganii S2
3 group_2981 EHELCC_16625 46676 47812 -1 rtcB RNA ligase RtcB family protein Morganella morganii S2
4 group_3281 NLDBIP_13000 8207 9433 -1 rtcB RNA-splicing ligase RtcB, repairs tRNA damage Morganella morganii S4
5 group_2981 NLDBIP_16835 46676 47812 -1 rtcB RNA ligase RtcB family protein Morganella morganii S4
6 group_3281 LHKJJB_13555 153010 154236 1 rtcB RNA-splicing ligase RtcB, repairs tRNA damage Morganella morganii S3
7 group_2981 LHKJJB_16635 20698 21834 1 rtcB RNA ligase RtcB family protein Morganella morganii S3
8 group_3281 HKOGLL_11475 8207 9433 -1 rtcB RNA-splicing ligase RtcB, repairs tRNA damage Morganella morganii S5
9 group_2981 HKOGLL_17600 20698 21834 1 rtcB RNA ligase RtcB family protein Morganella morganii S5
10 group_2981 PMI_RS17450 3830079 3831215 -1 RNA ligase RtcB family protein Proteus mirabilis HI4320