PF01061


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01061, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01061
Description ABC-2 type transporter

Occurence in the database

PF01061 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1303 FBDBKF_07970 125237 126007 1 yadH ABC-type multidrug transport system, permease component Morganella morganii S1
1 group_1303 EHELCC_13800 99431 100201 1 yadH ABC-type multidrug transport system, permease component Morganella morganii S2
2 group_1303 NLDBIP_14245 120306 121076 1 yadH ABC-type multidrug transport system, permease component Morganella morganii S4
3 group_1303 LHKJJB_08605 38673 39443 -1 yadH ABC-type multidrug transport system, permease component Morganella morganii S3
4 group_1303 HKOGLL_08155 38673 39443 -1 yadH ABC-type multidrug transport system, permease component Morganella morganii S5
5 group_1303 F4V73_RS13015 217275 218045 -1 ABC transporter permease Morganella psychrotolerans
6 group_1303 PMI_RS00790 200484 201254 1 ABC transporter permease Proteus mirabilis HI4320