PF01016


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01016, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01016
Description Ribosomal L27 protein

Occurence in the database

PF01016 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1392 FBDBKF_08600 101891 102148 1 rpmA 50S ribosomal protein L27 Morganella morganii S1
1 group_1392 EHELCC_12925 61577 61834 -1 rpmA 50S ribosomal protein L27 Morganella morganii S2
2 group_1392 NLDBIP_13265 61577 61834 -1 rpmA 50S ribosomal protein L27 Morganella morganii S4
3 group_1392 LHKJJB_13290 100609 100866 1 rpmA 50S ribosomal protein L27 Morganella morganii S3
4 group_1392 HKOGLL_11740 61577 61834 -1 rpmA 50S ribosomal protein L27 Morganella morganii S5
5 group_1392 F4V73_RS09825 68473 68733 1 rpmA 50S ribosomal protein L27 Morganella psychrotolerans
6 group_1392 PMI_RS16955 3732257 3732514 1 rpmA 50S ribosomal protein L27 Proteus mirabilis HI4320