PF00950


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00950, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00950
Description ABC 3 transport family

Occurence in the database

PF00950 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_637 FBDBKF_02075 103096 103881 -1 znuB zinc ABC transporter permease subunit ZnuB Morganella morganii S1
1 group_1815 FBDBKF_13455 69492 70367 1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S1
2 group_1816 FBDBKF_13460 70364 71218 1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S1
3 group_637 EHELCC_02545 490916 491701 -1 znuB zinc ABC transporter permease subunit ZnuB Morganella morganii S2
4 group_1816 EHELCC_08635 203973 204827 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S2
5 group_1815 EHELCC_08640 204824 205699 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S2
6 group_637 NLDBIP_00915 188435 189220 1 znuB zinc ABC transporter permease subunit ZnuB Morganella morganii S4
7 group_1816 NLDBIP_08960 203973 204827 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S4
8 group_1815 NLDBIP_08965 204824 205699 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S4
9 group_637 LHKJJB_01120 203465 204250 -1 znuB zinc ABC transporter permease subunit ZnuB Morganella morganii S3
10 group_1815 LHKJJB_05300 51460 52335 1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S3
11 group_1816 LHKJJB_05305 52332 53186 1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S3
12 group_637 HKOGLL_01160 208976 209761 -1 znuB zinc ABC transporter permease subunit ZnuB Morganella morganii S5
13 group_1816 HKOGLL_05610 188564 189418 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S5
14 group_1815 HKOGLL_05615 189415 190290 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S5
15 group_1816 F4V73_RS03305 704756 705610 -1 metal ABC transporter permease Morganella psychrotolerans
16 group_1815 F4V73_RS03310 705607 706482 -1 metal ABC transporter permease Morganella psychrotolerans
17 group_637 F4V73_RS04440 939102 939887 -1 znuB zinc ABC transporter permease subunit ZnuB Morganella psychrotolerans
18 group_1816 PMI_RS04975 1089417 1090274 -1 metal ABC transporter permease Proteus mirabilis HI4320
19 group_1815 PMI_RS04980 1090271 1091182 -1 metal ABC transporter permease Proteus mirabilis HI4320
20 group_637 PMI_RS05550 1210670 1211455 -1 znuB zinc ABC transporter permease subunit ZnuB Proteus mirabilis HI4320