PF00925


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00925, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00925
Description GTP cyclohydrolase II

Occurence in the database

PF00925 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_938 FBDBKF_05095 23837 24457 1 ribA GTP cyclohydrolase II Morganella morganii S1
1 group_938 EHELCC_12495 157037 157657 -1 ribA GTP cyclohydrolase II Morganella morganii S2
2 group_938 NLDBIP_12835 156992 157612 -1 ribA GTP cyclohydrolase II Morganella morganii S4
3 group_938 LHKJJB_12695 157037 157657 -1 ribA GTP cyclohydrolase II Morganella morganii S3
4 group_938 HKOGLL_11310 157037 157657 -1 ribA GTP cyclohydrolase II Morganella morganii S5
5 group_938 F4V73_RS05550 1178911 1179519 1 ribA GTP cyclohydrolase II Morganella psychrotolerans
6 group_938 PMI_RS06355 1391833 1392432 1 ribA GTP cyclohydrolase II Proteus mirabilis HI4320