PF00886


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00886, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00886
Description Ribosomal protein S16

Occurence in the database

PF00886 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2041 FBDBKF_15305 70286 70534 1 rpsP 30S ribosomal protein S16 Morganella morganii S1
1 group_2041 EHELCC_10940 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S2
2 group_2041 NLDBIP_11285 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S4
3 group_2041 LHKJJB_11145 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S3
4 group_2041 HKOGLL_09755 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S5
5 group_2041 F4V73_RS12145 13625 13873 -1 rpsP 30S ribosomal protein S16 Morganella psychrotolerans
6 group_2041 PMI_RS01860 438017 438265 1 rpsP 30S ribosomal protein S16 Proteus mirabilis HI4320