Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00873, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 31 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_682 | FBDBKF_02605 | 217488 | 220574 | 1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S1 |
1 | group_128 | FBDBKF_15965 | 43537 | 46713 | -1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S1 |
2 | group_56 | FBDBKF_16480 | 19454 | 22546 | -1 | mdtC | multidrug efflux RND transporter permease subunit MdtC | Morganella morganii S1 |
3 | group_56 | FBDBKF_16485 | 22543 | 25683 | -1 | acrB | MdtB/MuxB family multidrug efflux RND transporter permease subunit | Morganella morganii S1 |
4 | group_682 | EHELCC_03075 | 605308 | 608394 | 1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S2 |
5 | group_56 | EHELCC_08345 | 136440 | 139532 | -1 | mdtC | multidrug efflux RND transporter permease subunit MdtC | Morganella morganii S2 |
6 | group_56 | EHELCC_08350 | 139529 | 142669 | -1 | acrB | MdtB/MuxB family multidrug efflux RND transporter permease subunit | Morganella morganii S2 |
7 | group_128 | EHELCC_18570 | 971 | 4147 | -1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S2 |
8 | group_682 | NLDBIP_00385 | 71742 | 74828 | -1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S4 |
9 | group_56 | NLDBIP_08670 | 136440 | 139532 | -1 | mdtC | multidrug efflux RND transporter permease subunit MdtC | Morganella morganii S4 |
10 | group_56 | NLDBIP_08675 | 139529 | 142669 | -1 | acrB | MdtB/MuxB family multidrug efflux RND transporter permease subunit | Morganella morganii S4 |
11 | group_128 | NLDBIP_17400 | 30976 | 34152 | -1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S4 |
12 | group_682 | LHKJJB_01650 | 317857 | 320943 | 1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S3 |
13 | group_56 | LHKJJB_05590 | 114490 | 117630 | 1 | acrB | MdtB/MuxB family multidrug efflux RND transporter permease subunit | Morganella morganii S3 |
14 | group_56 | LHKJJB_05595 | 117627 | 120719 | 1 | mdtC | multidrug efflux RND transporter permease subunit MdtC | Morganella morganii S3 |
15 | group_128 | LHKJJB_17260 | 22036 | 25212 | 1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S3 |
16 | group_682 | HKOGLL_01690 | 323368 | 326454 | 1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S5 |
17 | group_56 | HKOGLL_05320 | 121031 | 124123 | -1 | mdtC | multidrug efflux RND transporter permease subunit MdtC | Morganella morganii S5 |
18 | group_56 | HKOGLL_05325 | 124120 | 127260 | -1 | acrB | MdtB/MuxB family multidrug efflux RND transporter permease subunit | Morganella morganii S5 |
19 | group_128 | HKOGLL_17135 | 30976 | 34152 | -1 | acrB | Multidrug efflux pump subunit AcrB | Morganella morganii S5 |
20 | group_56 | F4V73_RS02995 | 635375 | 638467 | -1 | mdtC | multidrug efflux RND transporter permease subunit MdtC | Morganella psychrotolerans |
21 | group_56 | F4V73_RS03000 | 638464 | 641577 | -1 | MdtB/MuxB family multidrug efflux RND transporter permease subunit | Morganella psychrotolerans | |
22 | group_128 | F4V73_RS03935 | 833738 | 836878 | 1 | CusA/CzcA family heavy metal efflux RND transporter | Morganella psychrotolerans | |
23 | group_682 | F4V73_RS05045 | 1072692 | 1075778 | 1 | efflux RND transporter permease subunit | Morganella psychrotolerans | |
24 | group_128 | F4V73_RS16345 | 83639 | 86815 | 1 | efflux RND transporter permease subunit | Morganella psychrotolerans | |
25 | group_128 | F4V73_RS17010 | 24624 | 27773 | -1 | efflux RND transporter permease subunit | Morganella psychrotolerans | |
26 | group_128 | PMI_RS00635 | 161877 | 165035 | -1 | efflux RND transporter permease subunit | Proteus mirabilis HI4320 | |
27 | group_56 | PMI_RS07735 | 1689478 | 1692609 | 1 | MdtB/MuxB family multidrug efflux RND transporter permease subunit | Proteus mirabilis HI4320 | |
28 | group_56 | PMI_RS07740 | 1692606 | 1695689 | 1 | mdtC | multidrug efflux RND transporter permease subunit MdtC | Proteus mirabilis HI4320 |
29 | group_128 | PMI_RS13345 | 2956999 | 2960076 | 1 | MexW/MexI family multidrug efflux RND transporter permease subunit | Proteus mirabilis HI4320 | |
30 | group_128 | PMI_RS17910 | 3934196 | 3937330 | 1 | efflux RND transporter permease subunit | Proteus mirabilis HI4320 |