PF00829


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00829, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00829
Description Ribosomal prokaryotic L21 protein

Occurence in the database

PF00829 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1391 FBDBKF_08595 101562 101870 1 rplU 50S ribosomal protein L21 Morganella morganii S1
1 group_1391 EHELCC_12930 61855 62163 -1 rplU 50S ribosomal protein L21 Morganella morganii S2
2 group_1391 NLDBIP_13270 61855 62163 -1 rplU 50S ribosomal protein L21 Morganella morganii S4
3 group_1391 LHKJJB_13285 100280 100588 1 rplU 50S ribosomal protein L21 Morganella morganii S3
4 group_1391 HKOGLL_11745 61855 62163 -1 rplU 50S ribosomal protein L21 Morganella morganii S5
5 group_1391 F4V73_RS09820 68145 68453 1 rplU 50S ribosomal protein L21 Morganella psychrotolerans
6 group_1391 PMI_RS16950 3731929 3732237 1 rplU 50S ribosomal protein L21 Proteus mirabilis HI4320