PF00828


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00828, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00828
Description Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Occurence in the database

PF00828 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2380 FBDBKF_19150 14245 14679 -1 rplO 50S ribosomal protein L15 Morganella morganii S1
1 group_2380 EHELCC_18895 14245 14679 -1 rplO 50S ribosomal protein L15 Morganella morganii S2
2 group_2380 NLDBIP_18910 14245 14679 -1 rplO 50S ribosomal protein L15 Morganella morganii S4
3 group_2380 LHKJJB_18765 14245 14679 -1 rplO 50S ribosomal protein L15 Morganella morganii S3
4 group_2380 HKOGLL_18500 14245 14679 -1 rplO 50S ribosomal protein L15 Morganella morganii S5
5 group_2380 F4V73_RS19015 15659 16093 1 rplO 50S ribosomal protein L15 Morganella psychrotolerans
6 group_2380 PMI_RS16245 3591137 3591571 1 rplO 50S ribosomal protein L15 Proteus mirabilis HI4320