PF00551


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00551, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00551
Description Formyl transferase

Occurence in the database

PF00551 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_973 FBDBKF_05375 83964 84812 1 purU formyltetrahydrofolate deformylase Morganella morganii S1
1 group_1801 FBDBKF_13370 51037 53022 -1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S1
2 group_2194 FBDBKF_16540 37579 38211 -1 purN phosphoribosylglycinamide formyltransferase Morganella morganii S1
3 group_2367 FBDBKF_19085 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S1
4 group_2194 EHELCC_08405 154565 155197 -1 purN phosphoribosylglycinamide formyltransferase Morganella morganii S2
5 group_1801 EHELCC_08725 222169 224154 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S2
6 group_973 EHELCC_12215 96682 97530 -1 purU formyltetrahydrofolate deformylase Morganella morganii S2
7 group_2367 EHELCC_18830 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S2
8 group_2194 NLDBIP_08730 154565 155197 -1 purN phosphoribosylglycinamide formyltransferase Morganella morganii S4
9 group_1801 NLDBIP_09050 222169 224154 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S4
10 group_973 NLDBIP_12555 96637 97485 -1 purU formyltetrahydrofolate deformylase Morganella morganii S4
11 group_2367 NLDBIP_18845 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S4
12 group_1801 LHKJJB_05215 33005 34990 -1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S3
13 group_2194 LHKJJB_05535 101962 102594 1 purN phosphoribosylglycinamide formyltransferase Morganella morganii S3
14 group_973 LHKJJB_12415 96682 97530 -1 purU formyltetrahydrofolate deformylase Morganella morganii S3
15 group_2367 LHKJJB_18700 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S3
16 group_2194 HKOGLL_05380 139156 139788 -1 purN phosphoribosylglycinamide formyltransferase Morganella morganii S5
17 group_1801 HKOGLL_05700 206760 208745 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S5
18 group_973 HKOGLL_11030 96682 97530 -1 purU formyltetrahydrofolate deformylase Morganella morganii S5
19 group_2367 HKOGLL_18435 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S5
20 group_2194 F4V73_RS03060 654744 655400 -1 purN phosphoribosylglycinamide formyltransferase Morganella psychrotolerans
21 group_1801 F4V73_RS03390 722789 724774 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella psychrotolerans
22 group_973 F4V73_RS05830 1240868 1241716 1 purU formyltetrahydrofolate deformylase Morganella psychrotolerans
23 group_2367 F4V73_RS19080 24734 25678 -1 fmt methionyl-tRNA formyltransferase Morganella psychrotolerans
24 group_1801 PMI_RS05080 1109779 1111761 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Proteus mirabilis HI4320
25 group_973 PMI_RS07230 1583345 1584193 1 purU formyltetrahydrofolate deformylase Proteus mirabilis HI4320
26 group_2194 PMI_RS07680 1675374 1676003 1 purN phosphoribosylglycinamide formyltransferase Proteus mirabilis HI4320
27 group_2367 PMI_RS16305 3600377 3601327 -1 fmt methionyl-tRNA formyltransferase Proteus mirabilis HI4320