PF00532


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00532, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 27 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00532
Description Periplasmic binding proteins and sugar binding domain of LacI family

Occurence in the database

PF00532 is associated with 27 different proteins (see tab "Protein list" and "Profile")
The 27 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2536 FBDBKF_02430 180898 181926 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S1
1 group_1287 FBDBKF_07820 89710 90708 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S1
2 group_192 FBDBKF_09205 71064 72059 -1 gntR gluconate operon transcriptional repressor GntR Morganella morganii S1
3 group_348 FBDBKF_12235 107745 108773 1 cytR DNA-binding transcriptional regulator CytR Morganella morganii S1
4 group_2536 EHELCC_02900 568718 569746 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S2
5 group_192 EHELCC_10205 74045 75040 1 gntR gluconate operon transcriptional repressor GntR Morganella morganii S2
6 group_1287 EHELCC_13650 63904 64902 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S2
7 group_348 EHELCC_14070 25932 26960 -1 cytR DNA-binding transcriptional regulator CytR Morganella morganii S2
8 group_2536 NLDBIP_00560 110390 111418 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S4
9 group_192 NLDBIP_10550 52316 53311 1 gntR gluconate operon transcriptional repressor GntR Morganella morganii S4
10 group_1287 NLDBIP_14095 84779 85777 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S4
11 group_348 NLDBIP_15165 29869 30897 -1 cytR DNA-binding transcriptional regulator CytR Morganella morganii S4
12 group_2536 LHKJJB_01475 281267 282295 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S3
13 group_1287 LHKJJB_08755 73972 74970 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S3
14 group_192 LHKJJB_10805 138217 139212 -1 gntR gluconate operon transcriptional repressor GntR Morganella morganii S3
15 group_348 LHKJJB_15445 107745 108773 1 cytR DNA-binding transcriptional regulator CytR Morganella morganii S3
16 group_2536 HKOGLL_01515 286778 287806 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S5
17 group_1287 HKOGLL_08305 73972 74970 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S5
18 group_192 HKOGLL_13865 71518 72513 -1 gntR gluconate operon transcriptional repressor GntR Morganella morganii S5
19 group_348 HKOGLL_14565 94408 95436 1 cytR DNA-binding transcriptional regulator CytR Morganella morganii S5
20 group_2536 F4V73_RS04805 1019853 1020881 1 malI Mal regulon transcriptional regulator MalI Morganella psychrotolerans
21 group_192 F4V73_RS10765 284238 285233 1 gntR gluconate operon transcriptional repressor GntR Morganella psychrotolerans
22 group_1287 F4V73_RS13225 267055 268053 -1 LacI family DNA-binding transcriptional regulator Morganella psychrotolerans
23 group_348 F4V73_RS17065 41433 42458 1 cytR DNA-binding transcriptional regulator CytR Morganella psychrotolerans
24 group_1287 PMI_RS10795 2377819 2378814 -1 LacI family DNA-binding transcriptional regulator Proteus mirabilis HI4320
25 group_192 PMI_RS13175 2925131 2926126 -1 gntR gluconate operon transcriptional repressor GntR Proteus mirabilis HI4320
26 group_348 PMI_RS15915 3531908 3532939 -1 cytR DNA-binding transcriptional regulator CytR Proteus mirabilis HI4320