PF00507


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00507, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00507
Description NADH-ubiquinone/plastoquinone oxidoreductase, chain 3

Occurence in the database

PF00507 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1899 FBDBKF_14165 29188 29634 -1 nuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) Morganella morganii S1
1 group_1899 EHELCC_08115 87351 87797 1 nuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) Morganella morganii S2
2 group_1899 NLDBIP_08440 87351 87797 1 nuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) Morganella morganii S4
3 group_1899 LHKJJB_05825 169362 169808 -1 nuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) Morganella morganii S3
4 group_1899 HKOGLL_05090 71942 72388 1 nuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) Morganella morganii S5
5 group_1899 F4V73_RS02770 584732 585178 1 NADH-quinone oxidoreductase subunit A Morganella psychrotolerans
6 group_1899 PMI_RS08645 1888189 1888641 -1 NADH-quinone oxidoreductase subunit A Proteus mirabilis HI4320