PF00478


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00478, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00478
Description IMP dehydrogenase / GMP reductase domain

Occurence in the database

PF00478 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2232 FBDBKF_17105 4819 6285 -1 guaB IMP dehydrogenase Morganella morganii S1
1 group_2232 EHELCC_01785 349216 350682 1 guaB IMP dehydrogenase Morganella morganii S2
2 group_2232 NLDBIP_01675 329454 330920 -1 guaB IMP dehydrogenase Morganella morganii S4
3 group_2232 LHKJJB_00360 61765 63231 1 guaB IMP dehydrogenase Morganella morganii S3
4 group_2232 HKOGLL_00400 67276 68742 1 guaB IMP dehydrogenase Morganella morganii S5
5 group_2232 F4V73_RS05865 1249233 1250699 -1 guaB IMP dehydrogenase Morganella psychrotolerans
6 group_2232 PMI_RS07525 1639689 1641155 -1 guaB IMP dehydrogenase Proteus mirabilis HI4320