PF00471


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00471, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00471
Description Ribosomal protein L33

Occurence in the database

PF00471 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2160 FBDBKF_16250 38096 38263 1 rpmG 50S ribosomal protein L33 Morganella morganii S1
1 group_2160 EHELCC_16285 38096 38263 1 rpmG 50S ribosomal protein L33 Morganella morganii S2
2 group_2160 NLDBIP_17055 23907 24074 -1 rpmG 50S ribosomal protein L33 Morganella morganii S4
3 group_2160 LHKJJB_16975 27009 27176 -1 rpmG 50S ribosomal protein L33 Morganella morganii S3
4 group_2160 HKOGLL_16865 38096 38263 1 rpmG 50S ribosomal protein L33 Morganella morganii S5
5 group_2160 F4V73_RS17345 102631 102798 -1 rpmG 50S ribosomal protein L33 Morganella psychrotolerans
6 group_2160 PMI_RS15615 3470506 3470673 1 rpmG 50S ribosomal protein L33 Proteus mirabilis HI4320