PF00468


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00468, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00468
Description Ribosomal protein L34

Occurence in the database

PF00468 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2084 FBDBKF_15590 49220 49360 1 rpmH 50S ribosomal protein L34 Morganella morganii S1
1 group_2084 EHELCC_15950 48520 48660 1 rpmH 50S ribosomal protein L34 Morganella morganii S2
2 group_2084 NLDBIP_16420 32003 32143 -1 rpmH 50S ribosomal protein L34 Morganella morganii S4
3 group_2084 LHKJJB_16385 48520 48660 1 rpmH 50S ribosomal protein L34 Morganella morganii S3
4 group_2084 HKOGLL_16155 48520 48660 1 rpmH 50S ribosomal protein L34 Morganella morganii S5
5 group_2084 F4V73_RS17570 148649 148789 -1 rpmH 50S ribosomal protein L34 Morganella psychrotolerans
6 group_2084 PMI_RS15495 3444954 3445097 -1 rpmH 50S ribosomal protein L34 Proteus mirabilis HI4320