PF00464


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00464, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00464
Description Serine hydroxymethyltransferase

Occurence in the database

PF00464 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_531 FBDBKF_01160 215535 216788 -1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S1
1 group_531 EHELCC_00385 92080 93333 1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S2
2 group_531 NLDBIP_03075 586803 588056 -1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S4
3 group_531 LHKJJB_04590 194044 195297 -1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S3
4 group_531 HKOGLL_02455 92285 93538 1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S5
5 group_531 F4V73_RS07235 1504593 1505846 -1 glyA serine hydroxymethyltransferase Morganella psychrotolerans
6 group_531 PMI_RS09215 2007901 2009154 -1 glyA serine hydroxymethyltransferase Proteus mirabilis HI4320