PF00456


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00456, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00456
Description Transketolase, thiamine diphosphate binding domain

Occurence in the database

PF00456 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_840 FBDBKF_04235 34488 37151 -1 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type Morganella morganii S1
1 group_1863 FBDBKF_13920 77592 79586 -1 tkt transketolase Morganella morganii S1
2 group_840 EHELCC_05525 93945 96608 -1 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type Morganella morganii S2
3 group_1863 EHELCC_11590 162468 164462 -1 tkt transketolase Morganella morganii S2
4 group_840 NLDBIP_05845 135010 137673 -1 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type Morganella morganii S4
5 group_1863 NLDBIP_11935 162468 164462 -1 tkt transketolase Morganella morganii S4
6 group_840 LHKJJB_02725 112534 115197 -1 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type Morganella morganii S3
7 group_1863 LHKJJB_11795 162468 164462 -1 tkt transketolase Morganella morganii S3
8 group_840 HKOGLL_06200 34398 37061 -1 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type Morganella morganii S5
9 group_1863 HKOGLL_10405 162468 164462 -1 tkt transketolase Morganella morganii S5
10 group_840 F4V73_RS08685 1795545 1798208 -1 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type Morganella psychrotolerans
11 group_1863 F4V73_RS12780 156417 158411 -1 tkt transketolase Morganella psychrotolerans
12 group_1863 PMI_RS01165 286327 288321 1 tkt transketolase Proteus mirabilis HI4320
13 group_840 PMI_RS10085 2202665 2205331 -1 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type Proteus mirabilis HI4320