PF00411


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00411, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00411
Description Ribosomal protein S11

Occurence in the database

PF00411 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2376 FBDBKF_19130 11849 12238 -1 rpsK 30S ribosomal protein S11 Morganella morganii S1
1 group_2376 EHELCC_18875 11849 12238 -1 rpsK 30S ribosomal protein S11 Morganella morganii S2
2 group_2376 NLDBIP_18890 11849 12238 -1 rpsK 30S ribosomal protein S11 Morganella morganii S4
3 group_2376 LHKJJB_18745 11849 12238 -1 rpsK 30S ribosomal protein S11 Morganella morganii S3
4 group_2376 HKOGLL_18480 11849 12238 -1 rpsK 30S ribosomal protein S11 Morganella morganii S5
5 group_2376 F4V73_RS19035 18099 18488 1 rpsK 30S ribosomal protein S11 Morganella psychrotolerans
6 group_2376 PMI_RS16260 3593580 3593969 1 rpsK 30S ribosomal protein S11 Proteus mirabilis HI4320