PF00389
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00389, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 28 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00389 |
Description |
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
Occurence in the database
PF00389 is associated with 28 different proteins (see tab "Protein list" and "Profile") |
The 28 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_660 |
FBDBKF_02340 |
157368 |
158369 |
-1 |
ldhA |
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase |
Morganella morganii S1 |
1 |
group_831 |
FBDBKF_04180 |
21061 |
22311 |
-1 |
serA |
phosphoglycerate dehydrogenase |
Morganella morganii S1 |
2 |
group_1657 |
FBDBKF_11020 |
24801 |
25778 |
-1 |
ghrB |
glyoxylate/hydroxypyruvate reductase GhrB |
Morganella morganii S1 |
3 |
group_1918 |
FBDBKF_14275 |
54315 |
55460 |
-1 |
pdxB |
4-phosphoerythronate dehydrogenase PdxB |
Morganella morganii S1 |
4 |
group_660 |
EHELCC_02810 |
545188 |
546189 |
-1 |
ldhA |
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase |
Morganella morganii S2 |
5 |
group_1657 |
EHELCC_05205 |
33690 |
34667 |
1 |
ghrB |
glyoxylate/hydroxypyruvate reductase GhrB |
Morganella morganii S2 |
6 |
group_831 |
EHELCC_05470 |
80518 |
81768 |
-1 |
serA |
phosphoglycerate dehydrogenase |
Morganella morganii S2 |
7 |
group_1918 |
EHELCC_08005 |
61525 |
62670 |
1 |
pdxB |
4-phosphoerythronate dehydrogenase PdxB |
Morganella morganii S2 |
8 |
group_660 |
NLDBIP_00650 |
133947 |
134948 |
1 |
ldhA |
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase |
Morganella morganii S4 |
9 |
group_1657 |
NLDBIP_05525 |
74755 |
75732 |
1 |
ghrB |
glyoxylate/hydroxypyruvate reductase GhrB |
Morganella morganii S4 |
10 |
group_831 |
NLDBIP_05790 |
121583 |
122833 |
-1 |
serA |
phosphoglycerate dehydrogenase |
Morganella morganii S4 |
11 |
group_1918 |
NLDBIP_08330 |
61525 |
62670 |
1 |
pdxB |
4-phosphoerythronate dehydrogenase PdxB |
Morganella morganii S4 |
12 |
group_660 |
LHKJJB_01385 |
257737 |
258738 |
-1 |
ldhA |
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase |
Morganella morganii S3 |
13 |
group_1657 |
LHKJJB_02405 |
52279 |
53256 |
1 |
ghrB |
glyoxylate/hydroxypyruvate reductase GhrB |
Morganella morganii S3 |
14 |
group_831 |
LHKJJB_02670 |
99107 |
100357 |
-1 |
serA |
phosphoglycerate dehydrogenase |
Morganella morganii S3 |
15 |
group_1918 |
LHKJJB_05935 |
194489 |
195634 |
-1 |
pdxB |
4-phosphoerythronate dehydrogenase PdxB |
Morganella morganii S3 |
16 |
group_660 |
HKOGLL_01425 |
263248 |
264249 |
-1 |
ldhA |
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase |
Morganella morganii S5 |
17 |
group_1918 |
HKOGLL_04980 |
46116 |
47261 |
1 |
pdxB |
4-phosphoerythronate dehydrogenase PdxB |
Morganella morganii S5 |
18 |
group_831 |
HKOGLL_06145 |
20971 |
22221 |
-1 |
serA |
phosphoglycerate dehydrogenase |
Morganella morganii S5 |
19 |
group_1657 |
HKOGLL_15785 |
75719 |
76696 |
1 |
ghrB |
glyoxylate/hydroxypyruvate reductase GhrB |
Morganella morganii S5 |
20 |
group_1918 |
F4V73_RS02635 |
555045 |
556175 |
1 |
pdxB |
4-phosphoerythronate dehydrogenase PdxB |
Morganella psychrotolerans |
21 |
group_660 |
F4V73_RS04720 |
996006 |
997010 |
-1 |
|
2-hydroxyacid dehydrogenase |
Morganella psychrotolerans |
22 |
group_1657 |
F4V73_RS08210 |
1707762 |
1708739 |
1 |
ghrB |
glyoxylate/hydroxypyruvate reductase GhrB |
Morganella psychrotolerans |
23 |
group_831 |
F4V73_RS08625 |
1780485 |
1781735 |
-1 |
serA |
phosphoglycerate dehydrogenase |
Morganella psychrotolerans |
24 |
group_660 |
PMI_RS05700 |
1241347 |
1242345 |
-1 |
|
2-hydroxyacid dehydrogenase |
Proteus mirabilis HI4320 |
25 |
group_1918 |
PMI_RS08785 |
1920895 |
1922022 |
-1 |
pdxB |
4-phosphoerythronate dehydrogenase PdxB |
Proteus mirabilis HI4320 |
26 |
group_1657 |
PMI_RS09620 |
2101949 |
2102908 |
1 |
ghrB |
glyoxylate/hydroxypyruvate reductase GhrB |
Proteus mirabilis HI4320 |
27 |
group_831 |
PMI_RS10015 |
2173709 |
2174959 |
-1 |
serA |
phosphoglycerate dehydrogenase |
Proteus mirabilis HI4320 |