PF00359
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00359, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00359 |
Description |
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 |
Occurence in the database
PF00359 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_737 |
FBDBKF_03260 |
52518 |
52985 |
1 |
ptsN |
PTS IIA-like nitrogen regulatory protein PtsN |
Morganella morganii S1 |
1 |
group_2326 |
FBDBKF_18100 |
22532 |
22981 |
1 |
ptsN |
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
Morganella morganii S1 |
2 |
group_737 |
EHELCC_07275 |
194118 |
194585 |
-1 |
ptsN |
PTS IIA-like nitrogen regulatory protein PtsN |
Morganella morganii S2 |
3 |
group_2326 |
EHELCC_16800 |
22532 |
22981 |
1 |
ptsN |
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
Morganella morganii S2 |
4 |
group_737 |
NLDBIP_07600 |
193991 |
194458 |
-1 |
ptsN |
PTS IIA-like nitrogen regulatory protein PtsN |
Morganella morganii S4 |
5 |
group_2326 |
NLDBIP_17650 |
32785 |
33234 |
-1 |
ptsN |
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
Morganella morganii S4 |
6 |
group_737 |
LHKJJB_07135 |
157737 |
158204 |
-1 |
ptsN |
PTS IIA-like nitrogen regulatory protein PtsN |
Morganella morganii S3 |
7 |
group_2326 |
LHKJJB_17570 |
32785 |
33234 |
-1 |
ptsN |
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
Morganella morganii S3 |
8 |
group_737 |
HKOGLL_03795 |
75183 |
75650 |
1 |
ptsN |
PTS IIA-like nitrogen regulatory protein PtsN |
Morganella morganii S5 |
9 |
group_2326 |
HKOGLL_17385 |
32785 |
33234 |
-1 |
ptsN |
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
Morganella morganii S5 |
10 |
group_2326 |
F4V73_RS10305 |
173308 |
173757 |
1 |
|
PTS sugar transporter subunit IIA |
Morganella psychrotolerans |
11 |
group_737 |
F4V73_RS11660 |
483659 |
484126 |
-1 |
ptsN |
PTS IIA-like nitrogen regulatory protein PtsN |
Morganella psychrotolerans |
12 |
group_2326 |
PMI_RS08715 |
1908072 |
1908515 |
-1 |
|
PTS sugar transporter subunit IIA |
Proteus mirabilis HI4320 |
13 |
group_737 |
PMI_RS18140 |
3984352 |
3984819 |
-1 |
ptsN |
PTS IIA-like nitrogen regulatory protein PtsN |
Proteus mirabilis HI4320 |