PF00327


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00327, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00327
Description Ribosomal protein L30p/L7e

Occurence in the database

PF00327 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2381 FBDBKF_19155 14683 14862 -1 rpmD 50S ribosomal protein L30 Morganella morganii S1
1 group_2381 EHELCC_18900 14683 14862 -1 rpmD 50S ribosomal protein L30 Morganella morganii S2
2 group_2381 NLDBIP_18915 14683 14862 -1 rpmD 50S ribosomal protein L30 Morganella morganii S4
3 group_2381 LHKJJB_18770 14683 14862 -1 rpmD 50S ribosomal protein L30 Morganella morganii S3
4 group_2381 HKOGLL_18505 14683 14862 -1 rpmD 50S ribosomal protein L30 Morganella morganii S5
5 group_2381 F4V73_RS19010 15476 15655 1 rpmD 50S ribosomal protein L30 Morganella psychrotolerans
6 group_2381 PMI_RS16240 3590954 3591133 1 rpmD 50S ribosomal protein L30 Proteus mirabilis HI4320