PF00325


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00325, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00325
Description Bacterial regulatory proteins, crp family

Occurence in the database

PF00325 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2521 FBDBKF_02195 128710 129633 1 lsrR transcriptional regulator LsrR Morganella morganii S1
1 group_2521 EHELCC_02665 516530 517453 1 lsrR transcriptional regulator LsrR Morganella morganii S2
2 group_2521 NLDBIP_00795 162683 163606 -1 lsrR transcriptional regulator LsrR Morganella morganii S4
3 group_2521 LHKJJB_01240 229079 230002 1 lsrR transcriptional regulator LsrR Morganella morganii S3
4 group_2521 HKOGLL_01280 234590 235513 1 lsrR transcriptional regulator LsrR Morganella morganii S5
5 group_2521 F4V73_RS04565 965357 966307 1 lsrR transcriptional regulator LsrR Morganella psychrotolerans