PF00312


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00312, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00312
Description Ribosomal protein S15

Occurence in the database

PF00312 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1407 FBDBKF_08685 118710 118979 1 rpsO 30S ribosomal protein S15 Morganella morganii S1
1 group_1407 EHELCC_12840 44746 45015 -1 rpsO 30S ribosomal protein S15 Morganella morganii S2
2 group_1407 NLDBIP_13180 44746 45015 -1 rpsO 30S ribosomal protein S15 Morganella morganii S4
3 group_1407 LHKJJB_13375 117428 117697 1 rpsO 30S ribosomal protein S15 Morganella morganii S3
4 group_1407 HKOGLL_11655 44746 45015 -1 rpsO 30S ribosomal protein S15 Morganella morganii S5
5 group_1407 F4V73_RS09910 85891 86160 1 rpsO 30S ribosomal protein S15 Morganella psychrotolerans
6 group_1407 PMI_RS17040 3749248 3749517 1 rpsO 30S ribosomal protein S15 Proteus mirabilis HI4320