PF00252


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00252, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00252
Description Ribosomal protein L16p/L10e

Occurence in the database

PF00252 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2392 FBDBKF_19210 18912 19322 -1 rplP 50S ribosomal protein L16 Morganella morganii S1
1 group_2392 EHELCC_18955 18912 19322 -1 rplP 50S ribosomal protein L16 Morganella morganii S2
2 group_2392 NLDBIP_18970 18912 19322 -1 rplP 50S ribosomal protein L16 Morganella morganii S4
3 group_2392 LHKJJB_18825 18912 19322 -1 rplP 50S ribosomal protein L16 Morganella morganii S3
4 group_2392 HKOGLL_18560 18912 19322 -1 rplP 50S ribosomal protein L16 Morganella morganii S5
5 group_2392 F4V73_RS18955 11016 11426 1 rplP 50S ribosomal protein L16 Morganella psychrotolerans
6 group_2392 PMI_RS16185 3586498 3586908 1 rplP 50S ribosomal protein L16 Proteus mirabilis HI4320