PF00203


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00203, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00203
Description Ribosomal protein S19

Occurence in the database

PF00203 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2395 FBDBKF_19225 20402 20680 -1 rpsS 30S ribosomal protein S19 Morganella morganii S1
1 group_2395 EHELCC_18970 20402 20680 -1 rpsS 30S ribosomal protein S19 Morganella morganii S2
2 group_2395 NLDBIP_18985 20402 20680 -1 rpsS 30S ribosomal protein S19 Morganella morganii S4
3 group_2395 LHKJJB_18840 20402 20680 -1 rpsS 30S ribosomal protein S19 Morganella morganii S3
4 group_2395 HKOGLL_18575 20402 20680 -1 rpsS 30S ribosomal protein S19 Morganella morganii S5
5 group_2395 F4V73_RS18940 9658 9936 1 rpsS 30S ribosomal protein S19 Morganella psychrotolerans
6 group_2395 PMI_RS16170 3585141 3585419 1 rpsS 30S ribosomal protein S19 Proteus mirabilis HI4320